Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the cox1 gene sequences
October 3, 2012
Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the cox1 gene sequences
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Title: | Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the cox1 gene sequences |
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Article_Title: | Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the cox1 gene sequences |
Authors: | Catalina Luca, Angelica Andreea Dudu, Adrian Luca, Anca Dinischiotu, Marieta Costache |
Affiliation: | 1 Biology Molecular Center, University of Bucharest, Romania 2 Faculty of Electronics, Telecommunications and Information Technology, University Politehnica of Bucharest, Romania |
Abstract: | The family Cyprinidae is the largest freshwater fish group in the world, including over 200 genera and 2100 species. Mitochondrial DNA investigations have been largely used to explore phylogenetic cyprinid relationships. A fragment of (302bp) from the mitochondrial DNA (mtDNA) subunit I citochrome oxidase gene (cox1) of cyprinid species was sequenced and compared in order to study their phylogenetic relationships. The topologies of neighbor-joining, maximum parsimony and maximum likelihood trees based on cox1 sequences allowed us to identify two major lineages in cyprinids: Cyprininae and Leuciscinae. The Cyprininae group is represented by Carassius auratus auratus and forms a separate branch in the trees. The Leuciscinae group includs Rutilus rutilus, Tinca tinca, Hypophthalmichthys molitrix, Arischthys nobilis, Ctenopharyngodon idella, Leuciscus borysthenicus celensis and Leuciscus cephalus. Misgurnus fossilis was used as outgroup species. |
Keywords: | molecular phylogeny, cox1 gene, cyprinid |
References: | Avise J. C., Molecular Markers, Natural History and Evolution, Chapman & Hall, New York. 1994 Briolay J., Galtier N., Brito R.M., Bouvet Y., Molecular phylogeny of Cyprinidae inferred from cytochrome b DNA sequences, Mol. Phylogenet. Evol., 9 (1),100 –108, 1998. Brito R.M., Briolay J., Galtier,N., Bouvet Y., Coelho M.M., Phylogenetic relationships within genus Leuciscus (Pisces, Cyprinidae) in Portuguese fresh waters, based on mitochondrial Cytochrome b sequences, Mol. Phylogenet. Evol., 8, 435 –442, 1997. Durand J.-D., Tsigenopoulos C. S. and P. Berrebi, Phylogeny and Biogeography of the Family Cyprinidae in the Middle East Inferred from Cytochrome b DNA – Evolutionary Significance of This Region, Mol. Phylogenet.Evol., 22 (1), pp. 91–100, 2002. Felsenstein J., Inferring Phylogenies. Sinauer Associates, Sunderland, Massachusetts, 2004 Fitch W. M., Toward defining the course of evolution: minimum change for a specific tree topology, Syst. Zool. 20, 406–416, 1971. Gilles A., Lecointre G., Faure E., Chappaz R., Brun G., Mitochondrial phylogeny of the European cyprinids: implications for their systematics, reticulate evolution and colonization time, Mol. Phylogenet.Evol., 10 (1),132 –143, 1998. Hasegawa M., H. Kishino and T.Yano, Dating of the human-ape splitting by a molecular clock of mitochondrial DNA, J. Mol. Evol., 22, 160–174, 1985. He S, Chen Y, Nakajima T., Sequences of cytochrome b gene for primitive cyprinid fishes in East Asia and their phylogenetic concerning, Chin. Sci. Bull., 46, 661 -665, 2001. He S., Liu H. and Chen Y., Molecular phylogenetic relationships of eastern Asian Cyprinidae (Pisces: cyprinidformes) inferred from cytochrome b sequences, Sci China Ser C-Life Sci, , 47(2), 130 -138, 2004. Luca C., Condac E., Dinischiotu A., Ionica E., Tesio C. and Costache M., Molecular phylogenetic relatioships in romanian cyprinids based on cox1 and cox2 sequences, Proceedings of Balkan Scientific Conference of Biology, Plovdiv, Bulgaria (Eds.B. Gruev, M.Nikolova and A. Donev), p. 87-102, 2005a. Luca C., Condac E., Ionică E., Crăciun N., Dinischiotu A., Tessio C. and Costache M., Subunitatea cox1 folosita ca marker filogenetic pentru ciprinide din Romania, Analele SNBC, vol. X, p. 568-571, 2005b Luca C., Condac E., Dinischiotu A., Ionica E., Tesio C. and Costache M., Molecular markers used in cyprinid fish phylogeny, Lucrări ştiinţifice Zootehnie şi Biotehnologii, vol. XXXVIII, Timişoara, p. 785- 791, 2005c. Nelson, J. S., Fishes of the World, 3rd ed., Wiley, New York, 1994. Saitou, N. and M. Nei, The neighbor joining method: a new method for reconstructing phylogenetic trees, Mol.Biol. Evol., 4, 406–425, 1987. Simons A. M., Mayden R. L., Phylogenetic relationships of the western North American phoxinins (Actinopterygii:cyprinidae) as inferred from mitochondrial 12S and 16S ribosomal RNA sequences, Mol Phylogenet Evol, 9, 308 -329, 1998. Simons A. M., Mayden R. L., Phylogenetic relationships of North American cyprinids and assessment of homology of the open posterior myodome, Copeia, 1, 13 -21, 1999. Swofford D. L., PAUP*: phylogenetic analysis using parsimony (and other methods). Sinauer, Sunderland, Mass.,1998. Tsigenopoulos S. C. and Berrebi P., Molecular Phylogeny of North Mediterranean Freshwater Barbs (Genus Barbus: Cyprinidae) Inferred from Cytochrome b Sequences: Biogeographic and Systematic Implications, Mol. Phylogenet.Evol., 14 (2), pp. 165–179, 2000. Wang X, He S, Chen Y., Sequence variations of the S7 ribosomal protein gene in primitive cyprinid fishes: Implication on phylogenetic analysis, Chin Sci Bull, 47(19), 1638 -1643, 2002. Wang X, Liu H, He S., Sequence analysis of cytochrome b gene indicated that East Asian group of cyprinid subfamily Leuciscinae (Teleostei:Cyprinidae) evolved independently, Prog. Natl. Sci., 14(2), 132 -137, 2004. Xuzhen Wang, Junbing Li, Shunping He, Molecular evidence for the monophyly of East Asian groups of Cyprinidae (Teleostei:Cypriniformes) derived from the nuclear recombination activating gene 2 sequences, Mol. Phylogenet.Evol., 42, 157 –170, 2007. Zardoya R., Doadrio I., Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids, J.Mol.Evol. 49, 227 –237, 1999. Zardoya R., Doadrio I., Phylogenetic relationships of Iberian cyprinids: systematic and biogeographical implications, Proc.R.Soc.Lond. B 265, 1365 –1372, 1998. |
Read_full_article: | pdf/18-2008/SU08Luca.pdf |
Correspondence: | Costache M., University of Bucharest, Molecular Biology Center, no. 91-95, Spl. Independentei, Bucharest 5, Romania, Tel +40-(21)-3181575; +40-722-683961, email: marietacostache@yahoo.com |
Read full article | |
Article Title: | Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the cox1 gene sequences |
Authors: | Catalina Luca, Angelica Andreea Dudu, Adrian Luca, Anca Dinischiotu, Marieta Costache |
Affiliation: | 1 Biology Molecular Center, University of Bucharest, Romania 2 Faculty of Electronics, Telecommunications and Information Technology, University Politehnica of Bucharest, Romania |
Abstract: | The family Cyprinidae is the largest freshwater fish group in the world, including over 200 genera and 2100 species. Mitochondrial DNA investigations have been largely used to explore phylogenetic cyprinid relationships. A fragment of (302bp) from the mitochondrial DNA (mtDNA) subunit I citochrome oxidase gene (cox1) of cyprinid species was sequenced and compared in order to study their phylogenetic relationships. The topologies of neighbor-joining, maximum parsimony and maximum likelihood trees based on cox1 sequences allowed us to identify two major lineages in cyprinids: Cyprininae and Leuciscinae. The Cyprininae group is represented by Carassius auratus auratus and forms a separate branch in the trees. The Leuciscinae group includs Rutilus rutilus, Tinca tinca, Hypophthalmichthys molitrix, Arischthys nobilis, Ctenopharyngodon idella, Leuciscus borysthenicus celensis and Leuciscus cephalus. Misgurnus fossilis was used as outgroup species. |
Keywords: | molecular phylogeny, cox1 gene, cyprinid |
References: | Avise J. C., Molecular Markers, Natural History and Evolution, Chapman & Hall, New York. 1994 Briolay J., Galtier N., Brito R.M., Bouvet Y., Molecular phylogeny of Cyprinidae inferred from cytochrome b DNA sequences, Mol. Phylogenet. Evol., 9 (1),100 –108, 1998. Brito R.M., Briolay J., Galtier,N., Bouvet Y., Coelho M.M., Phylogenetic relationships within genus Leuciscus (Pisces, Cyprinidae) in Portuguese fresh waters, based on mitochondrial Cytochrome b sequences, Mol. Phylogenet. Evol., 8, 435 –442, 1997. Durand J.-D., Tsigenopoulos C. S. and P. Berrebi, Phylogeny and Biogeography of the Family Cyprinidae in the Middle East Inferred from Cytochrome b DNA – Evolutionary Significance of This Region, Mol. Phylogenet.Evol., 22 (1), pp. 91–100, 2002. Felsenstein J., Inferring Phylogenies. Sinauer Associates, Sunderland, Massachusetts, 2004 Fitch W. M., Toward defining the course of evolution: minimum change for a specific tree topology, Syst. Zool. 20, 406–416, 1971. Gilles A., Lecointre G., Faure E., Chappaz R., Brun G., Mitochondrial phylogeny of the European cyprinids: implications for their systematics, reticulate evolution and colonization time, Mol. Phylogenet.Evol., 10 (1),132 –143, 1998. Hasegawa M., H. Kishino and T.Yano, Dating of the human-ape splitting by a molecular clock of mitochondrial DNA, J. Mol. Evol., 22, 160–174, 1985. He S, Chen Y, Nakajima T., Sequences of cytochrome b gene for primitive cyprinid fishes in East Asia and their phylogenetic concerning, Chin. Sci. Bull., 46, 661 -665, 2001. He S., Liu H. and Chen Y., Molecular phylogenetic relationships of eastern Asian Cyprinidae (Pisces: cyprinidformes) inferred from cytochrome b sequences, Sci China Ser C-Life Sci, , 47(2), 130 -138, 2004. Luca C., Condac E., Dinischiotu A., Ionica E., Tesio C. and Costache M., Molecular phylogenetic relatioships in romanian cyprinids based on cox1 and cox2 sequences, Proceedings of Balkan Scientific Conference of Biology, Plovdiv, Bulgaria (Eds.B. Gruev, M.Nikolova and A. Donev), p. 87-102, 2005a. Luca C., Condac E., Ionică E., Crăciun N., Dinischiotu A., Tessio C. and Costache M., Subunitatea cox1 folosita ca marker filogenetic pentru ciprinide din Romania, Analele SNBC, vol. X, p. 568-571, 2005b Luca C., Condac E., Dinischiotu A., Ionica E., Tesio C. and Costache M., Molecular markers used in cyprinid fish phylogeny, Lucrări ştiinţifice Zootehnie şi Biotehnologii, vol. XXXVIII, Timişoara, p. 785- 791, 2005c. Nelson, J. S., Fishes of the World, 3rd ed., Wiley, New York, 1994. Saitou, N. and M. Nei, The neighbor joining method: a new method for reconstructing phylogenetic trees, Mol.Biol. Evol., 4, 406–425, 1987. Simons A. M., Mayden R. L., Phylogenetic relationships of the western North American phoxinins (Actinopterygii:cyprinidae) as inferred from mitochondrial 12S and 16S ribosomal RNA sequences, Mol Phylogenet Evol, 9, 308 -329, 1998. Simons A. M., Mayden R. L., Phylogenetic relationships of North American cyprinids and assessment of homology of the open posterior myodome, Copeia, 1, 13 -21, 1999. Swofford D. L., PAUP*: phylogenetic analysis using parsimony (and other methods). Sinauer, Sunderland, Mass.,1998. Tsigenopoulos S. C. and Berrebi P., Molecular Phylogeny of North Mediterranean Freshwater Barbs (Genus Barbus: Cyprinidae) Inferred from Cytochrome b Sequences: Biogeographic and Systematic Implications, Mol. Phylogenet.Evol., 14 (2), pp. 165–179, 2000. Wang X, He S, Chen Y., Sequence variations of the S7 ribosomal protein gene in primitive cyprinid fishes: Implication on phylogenetic analysis, Chin Sci Bull, 47(19), 1638 -1643, 2002. Wang X, Liu H, He S., Sequence analysis of cytochrome b gene indicated that East Asian group of cyprinid subfamily Leuciscinae (Teleostei:Cyprinidae) evolved independently, Prog. Natl. Sci., 14(2), 132 -137, 2004. Xuzhen Wang, Junbing Li, Shunping He, Molecular evidence for the monophyly of East Asian groups of Cyprinidae (Teleostei:Cypriniformes) derived from the nuclear recombination activating gene 2 sequences, Mol. Phylogenet.Evol., 42, 157 –170, 2007. Zardoya R., Doadrio I., Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids, J.Mol.Evol. 49, 227 –237, 1999. Zardoya R., Doadrio I., Phylogenetic relationships of Iberian cyprinids: systematic and biogeographical implications, Proc.R.Soc.Lond. B 265, 1365 –1372, 1998. |
*Correspondence: | Costache M., University of Bucharest, Molecular Biology Center, no. 91-95, Spl. Independentei, Bucharest 5, Romania, Tel +40-(21)-3181575; +40-722-683961, email: marietacostache@yahoo.com |